gridmanager_base.hh

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#ifndef DUMUX_IO_GRID_MANAGER_BASE_HH
#define DUMUX_IO_GRID_MANAGER_BASE_HH
 
#include <array>
#include <bitset>
#include <memory>
#include <sstream>
 
#include <dune/common/exceptions.hh>
#include <dune/common/classname.hh>
 
#include <dune/common/version.hh>
#if DUNE_VERSION_LT(DUNE_COMMON,2,7)
#include <dune/common/parallel/collectivecommunication.hh>
#else
#include <dune/common/parallel/communication.hh>
#endif
 
#include <dune/common/parallel/mpihelper.hh>
#include <dune/grid/io/file/dgfparser/dgfparser.hh>
#include <dune/grid/io/file/gmshreader.hh>
#include <dune/grid/common/gridfactory.hh>
#include <dune/grid/utility/structuredgridfactory.hh>
 
#include <dumux/common/parameters.hh>
#include <dumux/discretization/method.hh>
#include <dumux/io/vtk/vtkreader.hh>
 
#include "griddata.hh"
 
namespace Dumux {
 
template <class Grid>
class GridManager;
 
template <class GridType>
class GridManagerBase
{
public:
    using Grid = GridType;
    using GridData = Dumux::GridData<Grid>;
 
    void init(const std::string& modelParamGroup = "")
    {
        DUNE_THROW(Dune::NotImplemented,
                    "The header with the GridManager specialization for grid type " << Dune::className<Grid>()
                    << " is not included or no specialization has been implemented!"
                    << " In case of the latter, consider providing your own GridManager.");
    }
 
    Grid& grid()
    {
        if(enableDgfGridPointer_)
            return *dgfGridPtr();
        else
            return *gridPtr();
    }
 
    void loadBalance()
    {
        if (Dune::MPIHelper::getCollectiveCommunication().size() > 1)
        {
            // if we may have dgf parameters use load balancing of the dgf pointer
            if(enableDgfGridPointer_)
            {
                dgfGridPtr().loadBalance();
                // update the grid data
                gridData_ = std::make_shared<GridData>(dgfGridPtr());
            }
 
            // if we have gmsh parameters we have to manually load balance the data
            else if (enableGmshDomainMarkers_)
            {
                // element and face markers are communicated during load balance
                auto dh = gridData_->createGmshDataHandle();
                gridPtr()->loadBalance(dh.interface());
                gridPtr()->communicate(dh.interface(), Dune::InteriorBorder_All_Interface, Dune::ForwardCommunication);
            }
            else
                gridPtr()->loadBalance();
        }
    }
 
    std::shared_ptr<GridData> getGridData() const
    {
        if (!gridData_)
            DUNE_THROW(Dune::IOError, "No grid data available");
 
        return gridData_;
    }
 
 
protected:
 
    std::shared_ptr<Grid>& gridPtr()
    {
        if(!enableDgfGridPointer_)
            return gridPtr_;
        else
            DUNE_THROW(Dune::InvalidStateException, "You are using DGF. To get the grid pointer use method dgfGridPtr()!");
    }
 
    Dune::GridPtr<Grid>& dgfGridPtr()
    {
        if(enableDgfGridPointer_)
            return dgfGridPtr_;
        else
            DUNE_THROW(Dune::InvalidStateException, "The DGF grid pointer is only available if the grid was constructed with a DGF file!");
    }
 
    std::string getFileExtension(const std::string& fileName) const
    {
        std::size_t i = fileName.rfind('.', fileName.length());
        if (i != std::string::npos)
        {
            return(fileName.substr(i+1, fileName.length() - i));
        }
        else
        {
            DUNE_THROW(Dune::IOError, "Please provide and extension for your grid file ('"<< fileName << "')!");
        }
        return "";
    }
 
    void makeGridFromFile(const std::string& fileName,
                          const std::string& modelParamGroup)
    {
        // We found a file in the input file...does it have a supported extension?
        const std::string extension = getFileExtension(fileName);
        if (extension != "dgf" && extension != "msh" && extension != "vtu" && extension != "vtp")
            DUNE_THROW(Dune::IOError, "Grid type " << Dune::className<Grid>() << " doesn't support grid files with extension: *."<< extension);
 
        // Dune Grid Format (DGF) files
        if (extension == "dgf")
        {
            enableDgfGridPointer_ = true;
            dgfGridPtr() = Dune::GridPtr<Grid>(fileName.c_str(), Dune::MPIHelper::getCommunicator());
            gridData_ = std::make_shared<GridData>(dgfGridPtr_);
        }
 
        // Gmsh mesh format
        else if (extension == "msh")
        {
            // get some optional parameters
            const bool verbose = getParamFromGroup<bool>(modelParamGroup, "Grid.Verbosity", false);
            const bool boundarySegments = getParamFromGroup<bool>(modelParamGroup, "Grid.BoundarySegments", false);
            const bool domainMarkers = getParamFromGroup<bool>(modelParamGroup, "Grid.DomainMarkers", false);
 
            if (domainMarkers)
                enableGmshDomainMarkers_ = true;
 
            // as default read it on all processes in parallel
            if(domainMarkers)
            {
                std::vector<int> boundaryMarkers, elementMarkers;
                auto gridFactory = std::make_unique<Dune::GridFactory<Grid>>();
                Dune::GmshReader<Grid>::read(*gridFactory, fileName, boundaryMarkers, elementMarkers, verbose, boundarySegments);
                gridPtr() = std::shared_ptr<Grid>(gridFactory->createGrid());
                gridData_ = std::make_shared<GridData>(gridPtr_, std::move(gridFactory), std::move(elementMarkers), std::move(boundaryMarkers));
            }
            else
            {
                auto gridFactory = std::make_unique<Dune::GridFactory<Grid>>();
                Dune::GmshReader<Grid>::read(*gridFactory, fileName, verbose, boundarySegments);
                gridPtr() = std::shared_ptr<Grid>(gridFactory->createGrid());
            }
        }
 
        // VTK file formats for unstructured grids
        else if (extension == "vtu" || extension == "vtp")
        {
            if (Dune::MPIHelper::getCollectiveCommunication().size() > 1)
                DUNE_THROW(Dune::NotImplemented, "Reading grids in parallel from VTK file formats is currently not supported!");
 
            VTKReader vtkReader(fileName);
            VTKReader::Data cellData, pointData;
            auto gridFactory = std::make_unique<Dune::GridFactory<Grid>>();
            const bool verbose = getParamFromGroup<bool>(modelParamGroup, "Grid.Verbosity", false);
            gridPtr() = vtkReader.readGrid(*gridFactory, cellData, pointData, verbose);
            gridData_ = std::make_shared<GridData>(gridPtr_, std::move(gridFactory), std::move(cellData), std::move(pointData));
        }
    }
 
    void makeGridFromDgfFile(const std::string& fileName)
    {
        // We found a file in the input file...does it have a supported extension?
        const std::string extension = getFileExtension(fileName);
        if(extension != "dgf")
            DUNE_THROW(Dune::IOError, "Grid type " << Dune::className<Grid>() << " only supports DGF (*.dgf) but the specified filename has extension: *."<< extension);
 
        enableDgfGridPointer_ = true;
        dgfGridPtr() = Dune::GridPtr<Grid>(fileName.c_str(), Dune::MPIHelper::getCommunicator());
        gridData_ = std::make_shared<GridData>(dgfGridPtr_);
    }
 
    enum CellType {Simplex, Cube};
 
    template <int dim, int dimworld>
    void makeStructuredGrid(CellType cellType,
                            const std::string& modelParamGroup)
    {
        using GlobalPosition = Dune::FieldVector<typename Grid::ctype, dimworld>;
        const auto upperRight = getParamFromGroup<GlobalPosition>(modelParamGroup, "Grid.UpperRight");
        const auto lowerLeft = getParamFromGroup<GlobalPosition>(modelParamGroup, "Grid.LowerLeft", GlobalPosition(0.0));
 
        using CellArray = std::array<unsigned int, dim>;
        CellArray cells; cells.fill(1);
        cells = getParamFromGroup<CellArray>(modelParamGroup, "Grid.Cells", cells);
 
        // make the grid
        if (cellType == CellType::Cube)
        {
            gridPtr() = Dune::StructuredGridFactory<Grid>::createCubeGrid(lowerLeft, upperRight, cells);
        }
        else if (cellType == CellType::Simplex)
        {
            gridPtr() = Dune::StructuredGridFactory<Grid>::createSimplexGrid(lowerLeft, upperRight, cells);
        }
        else
        {
            DUNE_THROW(Dune::GridError, "Unknown cell type for making structured grid! Choose Cube or Simplex.");
        }
    }
 
    void maybeRefineGrid(const std::string& modelParamGroup)
    {
        if (hasParamInGroup(modelParamGroup, "Grid.Refinement"))
            grid().globalRefine(getParamFromGroup<int>(modelParamGroup, "Grid.Refinement"));
    }
 
    bool enableDgfGridPointer_ = false;
 
    bool enableGmshDomainMarkers_ = false;
 
    std::shared_ptr<Grid> gridPtr_;
    Dune::GridPtr<Grid> dgfGridPtr_;
 
    std::shared_ptr<GridData> gridData_;
};
 
template <class Grid>
class GridManager : public GridManagerBase<Grid> {};
 
} // end namespace Dumux
 
#endif