fv2dpressureadaptive.hh

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#ifndef DUMUX_FV2DPRESSURE2P2C_ADAPTIVE_HH
#define DUMUX_FV2DPRESSURE2P2C_ADAPTIVE_HH
 
// dune environent:
#include <dune/istl/bvector.hh>
#include <dune/istl/operators.hh>
#include <dune/istl/solvers.hh>
#include <dune/istl/preconditioners.hh>
 
// dumux environment
#include <dumux/porousmediumflow/2p2c/sequential/fvpressure.hh>
#include <dumux/porousmediumflow/2p2c/sequential/adaptiveproperties.hh>
// include 2p mpfa pressure model
#include <dumux/porousmediumflow/2p/sequential/diffusion/mpfa/lmethod/2dtransmissibilitycalculator.hh>
 
#include <dumux/common/math.hh>
#include <dumux/io/vtkmultiwriter.hh>
 
namespace Dumux {
 
template<class TypeTag> class FV2dPressure2P2CAdaptive
: public FVPressure2P2C<TypeTag>
{
    //the model implementation
    using Implementation = GetPropType<TypeTag, Properties::PressureModel>;
    using BaseType = FVPressure<TypeTag>;
 
    using GridView = typename GetPropType<TypeTag, Properties::GridGeometry>::GridView;
    using Scalar = GetPropType<TypeTag, Properties::Scalar>;
    using Problem = GetPropType<TypeTag, Properties::Problem>;
 
    using Indices = typename GetPropType<TypeTag, Properties::ModelTraits>::Indices;
 
    using CellData = GetPropType<TypeTag, Properties::CellData>;
    enum
    {
        dim = GridView::dimension, dimWorld = GridView::dimensionworld
    };
    enum
    {
        pw = Indices::pressureW,
        pn = Indices::pressureN
    };
    enum
    {
        wPhaseIdx = Indices::wPhaseIdx, nPhaseIdx = Indices::nPhaseIdx,
        wCompIdx = Indices::wPhaseIdx, nCompIdx = Indices::nPhaseIdx
    };
    enum
    {
        rhs = BaseType::rhs, matrix = BaseType::matrix,
    };
 
    // using declarations to abbreviate several dune classes...
    using Intersection = typename GridView::Intersection;
    using IntersectionIterator = typename GridView::IntersectionIterator;
 
    // convenience shortcuts for Vectors/Matrices
    using GlobalPosition = Dune::FieldVector<Scalar, dimWorld>;
    using TransmissivityMatrix = Dune::FieldVector<Scalar,dim+1>;
    using DimMatrix = Dune::FieldMatrix<Scalar, dim, dim>;
    using PhaseVector = Dune::FieldVector<Scalar, getPropValue<TypeTag, Properties::NumPhases>()>;
 
    // the typenames used for the stiffness matrix and solution vector
    using Matrix = GetPropType<TypeTag, Properties::PressureCoefficientMatrix>;
 
    using TransmissibilityCalculator = FvMpfaL2dTransmissibilityCalculator<TypeTag>;
protected:
    Problem& problem()
    {
        return this->problem_;
    }
    const Problem& problem() const
    {
        return this->problem_;
    }
 
public:
    //initializes the matrix to store the system of equations
    void initializeMatrix();
    //function which assembles the system of equations to be solved
    void assemble(bool first);
 
    void getMpfaFlux(const IntersectionIterator&, const CellData&);
 
    // mpfa transmissibilities
    int computeTransmissibilities(const IntersectionIterator&,
                                    IntersectionIterator&,
                                    TransmissivityMatrix&,
                                    TransmissivityMatrix&,
                                    GlobalPosition&,
                                    int&);
 
    void adaptPressure()
    {
        int gridSize = problem().gridView().size(0);
        this->pressure().resize(gridSize);
 
        for(int i=0; i< gridSize; i++)
        {
            this->pressure()[i]
                  = problem().variables().cellData(i).pressure(this->pressureType);
        }
    }
 
 
    FV2dPressure2P2CAdaptive(Problem& problem) : FVPressure2P2C<TypeTag>(problem),
            problem_(problem), transmissibilityCalculator_(problem)
    {
        enableVolumeIntegral = getParam<bool>("Impet.EnableVolumeIntegral");
        enableMPFA = getParam<bool>("GridAdapt.EnableMultiPointFluxApproximation");
 
        if(getParam<int>("GridAdapt.MaxInteractionVolumes") != 1)
            enableSecondHalfEdge = true;
        else
            enableSecondHalfEdge = false;
 
        // prepare rotation matrix: R_ is initialized as zero matrix
        R_=0.;
        // evaluate matrix R
        if (dim == 2)
        {
            R_[0][1] = 1;
            R_[1][0] = -1;
        }
    }
 
private:
    Problem& problem_;
    Implementation &asImp_()
    {   return *static_cast<Implementation *>(this);}
 
    const Implementation &asImp_() const
    {   return *static_cast<const Implementation *>(this);}
 
protected:
    // mpfa transmissibilities from mpfal2pfa
    int transmissibilityAdapter_(const IntersectionIterator&,
            const IntersectionIterator&,
            IntersectionIterator&,
            GlobalPosition&,
            TransmissivityMatrix&);
 
    DimMatrix R_;
    bool enableVolumeIntegral; 
    bool enableMPFA; 
    bool enableSecondHalfEdge; 
    TransmissibilityCalculator transmissibilityCalculator_;
};
 
 
 
template<class TypeTag>
void FV2dPressure2P2CAdaptive<TypeTag>::initializeMatrix()
{
    int gridSize_ = problem().gridView().size(0);
    // update RHS vector, matrix
    this->A_.setSize (gridSize_,gridSize_); //
    this->f_.resize(gridSize_);
 
    // determine matrix row sizes
    for (const auto& element : elements(problem().gridView()))
    {
        // cell index
        int globalIdxI = problem().variables().index(element);
        CellData& cellDataI = problem().variables().cellData(globalIdxI);
 
        // initialize row size
        int rowSize = 1;
 
        // set perimeter to zero
        cellDataI.perimeter() = 0;
 
        // prepare storage for all found 3rd cells
        std::vector<int> foundAdditionals;
 
        int numberOfIntersections = 0;
        // run through all intersections with neighbors
        const auto isEndIt = problem().gridView().iend(element);
        for (auto isIt = problem().gridView().ibegin(element); isIt != isEndIt; ++isIt)
        {
            const auto& intersection = *isIt;
 
            cellDataI.perimeter() += intersection.geometry().volume();
            numberOfIntersections++;
            if (intersection.neighbor())
            {
                rowSize++;
 
                // if mpfa is used, more entries might be needed if both halfedges are regarded
                if (enableMPFA && (enableSecondHalfEdge && intersection.outside().level() != element.level()))
                {
                    GlobalPosition globalPos3(0.);
                    int globalIdx3=-1;
                    TransmissivityMatrix T(0.);
                    auto additionalIsIt = isIt;
                    TransmissivityMatrix additionalT(0.);
                    // compute Transmissibilities: also examines subcontrolvolume information
                    int halfedgesStored
                        = problem().variables().getMpfaData(intersection, additionalIsIt, T, additionalT, globalPos3, globalIdx3);
                    if (halfedgesStored == 0)
                        halfedgesStored = problem().pressureModel().computeTransmissibilities(isIt,additionalIsIt, T,additionalT,
                                                                                              globalPos3, globalIdx3 );
 
                    if(halfedgesStored == 2)
                    {
                        bool increaseRowSize = true;
                        //check if additional cell is ordinary neighbor of eIt
                        for (const auto& intersection2 : intersections(problem_.gridView(), element))
                        {
                            if(!intersection2.neighbor())
                                continue;
                            if(additionalIsIt->outside() == intersection2.outside() )
                                increaseRowSize = false;
                        }
                        //also check if additional cell was already used for another interaction triangle
                        for (unsigned int i = 0; i < foundAdditionals.size(); i++)
                            if(foundAdditionals[i] == problem().variables().index(additionalIsIt->outside()))
                                    increaseRowSize = false;
 
                        if (increaseRowSize)
                        {
                            rowSize++;
                            foundAdditionals.push_back(problem().variables().index(additionalIsIt->outside()));
                        }
                    }
                }
            }
        }
 
        cellDataI.fluxData().resize(numberOfIntersections);
        this->A_.setrowsize(globalIdxI, rowSize);
    }
    this->A_.endrowsizes();
 
    // determine position of matrix entries
    for (const auto& element : elements(problem().gridView()))
    {
        // cell index
        int globalIdxI = problem().variables().index(element);
 
        // add diagonal index
        this->A_.addindex(globalIdxI, globalIdxI);
 
        // run through all intersections with neighbors
        const auto isEndIt = problem().gridView().iend(element);
        for (auto isIt = problem().gridView().ibegin(element); isIt != isEndIt; ++isIt)
        {
            const auto& intersection = *isIt;
 
            if (intersection.neighbor())
            {
                // access neighbor
                int globalIdxJ = problem().variables().index(intersection.outside());
 
                // add off diagonal index
                this->A_.addindex(globalIdxI, globalIdxJ);
 
                // if mpfa is used, more entries might be needed if both halfedges are regarded
                if (enableMPFA && (enableSecondHalfEdge && intersection.outside().level() != element.level()))
                {
                    GlobalPosition globalPos3(0.);
                    int globalIdx3=-1;
                    TransmissivityMatrix T(0.);
                    auto additionalIsIt = isIt;
                    TransmissivityMatrix additionalT(0.);
                    // compute Transmissibilities: also examines subcontrolvolume information
                    int halfedgesStored
                        = problem().variables().getMpfaData(intersection, additionalIsIt, T, additionalT, globalPos3, globalIdx3);
                    if (halfedgesStored == 0)
                        halfedgesStored = problem().pressureModel().computeTransmissibilities(isIt,additionalIsIt, T,additionalT,
                                                                                              globalPos3, globalIdx3 );
                    // add off diagonal index if 2 half-edges regarded
                    if(halfedgesStored == 2)
                        this->A_.addindex(globalIdxI, problem().variables().index(additionalIsIt->outside()));
                }
            }
        }
    }
    this->A_.endindices();
 
    return;
}
 
 
template<class TypeTag>
void FV2dPressure2P2CAdaptive<TypeTag>::assemble(bool first)
{
    if(first)
    {
        BaseType::assemble(true);
        return;
    }
 
    initializeMatrix();
    // initialization: set matrix A_ to zero
    this->A_ = 0;
    this->f_ = 0;
 
    for (const auto& element : elements(problem().gridView()))
    {
        // get the global index of the cell
        int globalIdxI = problem().variables().index(element);
 
        // assemble interior element contributions
        if (element.partitionType() == Dune::InteriorEntity)
        {
            // get the cell data
            CellData& cellDataI = problem().variables().cellData(globalIdxI);
 
            Dune::FieldVector<Scalar, 2> entries(0.);
 
            /*****  source term ***********/
            problem().pressureModel().getSource(entries, element, cellDataI, first);
            this->f_[globalIdxI] += entries[rhs];
 
            /*****  flux term ***********/
            // iterate over all faces of the cell
            auto isEndIt = problem().gridView().iend(element);
            for (auto isIt = problem().gridView().ibegin(element); isIt != isEndIt; ++isIt)
            {
                const auto& intersection = *isIt;
 
                /************* handle interior face *****************/
                if (intersection.neighbor())
                {
                    auto elementNeighbor = intersection.outside();
 
                    int globalIdxJ = problem().variables().index(elementNeighbor);
 
                    //check for hanging nodes
                    //take a hanging node never from the element with smaller level!
                    bool haveSameLevel = (element.level() == elementNeighbor.level());
                    // calculate only from one side, but add matrix entries for both sides
                    // the last condition is needed to properly assemble in the presence
                    // of ghost elements
                    if (getPropValue<TypeTag, Properties::VisitFacesOnlyOnce>()
                        && (globalIdxI > globalIdxJ) && haveSameLevel
                        && elementNeighbor.partitionType() == Dune::InteriorEntity)
                        continue;
 
                    entries = 0;
                    //check for hanging nodes
                    if(!haveSameLevel && enableMPFA)
                    {
                        problem().pressureModel().getMpfaFlux(isIt, cellDataI);
                    }
                    else
                    {
                        problem().pressureModel().getFlux(entries, intersection, cellDataI, first);
 
                        //set right hand side
                        this->f_[globalIdxI] -= entries[rhs];
 
                        // set diagonal entry
                        this->A_[globalIdxI][globalIdxI] += entries[matrix];
 
                            // set off-diagonal entry
                        this->A_[globalIdxI][globalIdxJ] -= entries[matrix];
 
                        // The second condition is needed to not spoil the ghost element entries
                        if (getPropValue<TypeTag, Properties::VisitFacesOnlyOnce>()
                            && elementNeighbor.partitionType() == Dune::InteriorEntity)
                        {
                            this->f_[globalIdxJ] += entries[rhs];
                            this->A_[globalIdxJ][globalIdxJ] += entries[matrix];
                            this->A_[globalIdxJ][globalIdxI] -= entries[matrix];
                        }
                    }
 
                } // end neighbor
 
                /************* boundary face ************************/
                else
                {
                    entries = 0;
                    problem().pressureModel().getFluxOnBoundary(entries, intersection, cellDataI, first);
 
                    //set right hand side
                    this->f_[globalIdxI] += entries[rhs];
                    // set diagonal entry
                    this->A_[globalIdxI][globalIdxI] += entries[matrix];
                }
            } //end interfaces loop
//            printmatrix(std::cout, this->A_, "global stiffness matrix", "row", 11, 3);
 
            /*****  storage term ***********/
            entries = 0;
            problem().pressureModel().getStorage(entries, element, cellDataI, first);
            this->f_[globalIdxI] += entries[rhs];
            // set diagonal entry
            this->A_[globalIdxI][globalIdxI] += entries[matrix];
        }
        // assemble overlap and ghost element contributions
        else
        {
            this->A_[globalIdxI] = 0.0;
            this->A_[globalIdxI][globalIdxI] = 1.0;
            this->f_[globalIdxI] = this->pressure()[globalIdxI];
        }
 
    } // end grid traversal
//    printmatrix(std::cout, this->A_, "global stiffness matrix after assempling", "row", 11,3);
//    printvector(std::cout, this->f_, "right hand side", "row", 10);
    return;
}
 
 
template<class TypeTag>
void FV2dPressure2P2CAdaptive<TypeTag>::getMpfaFlux(const IntersectionIterator& intersectionIterator,
                                                    const CellData& cellDataI)
{
    // acess Cell I
    auto elementI = intersectionIterator->inside();
    int globalIdxI = problem().variables().index(elementI);
 
    // get global coordinate of cell center
    const GlobalPosition& globalPos = elementI.geometry().center();
 
    // cell volume & perimeter, assume linear map here
    Scalar volume = elementI.geometry().volume();
    Scalar perimeter = cellDataI.perimeter();
 
    const GlobalPosition& gravity_ = problem().gravity();
 
    // get absolute permeability
    DimMatrix permeabilityI(problem().spatialParams().intrinsicPermeability(elementI));
 
    // access neighbor
    auto neighbor = intersectionIterator->outside();
    int globalIdxJ = problem().variables().index(neighbor);
    CellData& cellDataJ = problem().variables().cellData(globalIdxJ);
 
    // gemotry info of neighbor
    const GlobalPosition& globalPosNeighbor = neighbor.geometry().center();
 
    // distance vector between barycenters
    GlobalPosition distVec = globalPosNeighbor - globalPos;
 
    // compute distance between cell centers
    Scalar dist = distVec.two_norm();
 
    GlobalPosition unitDistVec(distVec);
    unitDistVec /= dist;
 
    DimMatrix permeabilityJ
        = problem().spatialParams().intrinsicPermeability(neighbor);
 
    // compute vectorized permeabilities
    DimMatrix meanPermeability(0);
    harmonicMeanMatrix(meanPermeability, permeabilityI, permeabilityJ);
 
    Dune::FieldVector<Scalar, dim> permeability(0);
    meanPermeability.mv(unitDistVec, permeability);
 
    // get average density for gravity flux
    Scalar rhoMeanW = 0.5 * (cellDataI.density(wPhaseIdx) + cellDataJ.density(wPhaseIdx));
    Scalar rhoMeanNW = 0.5 * (cellDataI.density(nPhaseIdx) + cellDataJ.density(nPhaseIdx));
 
    // reset potential gradients
    Scalar potentialW = 0;
    Scalar potentialNW = 0;
 
    // determine volume derivatives in neighbor
    if (!cellDataJ.hasVolumeDerivatives())
        this->volumeDerivatives(globalPosNeighbor, neighbor);
 
    Scalar dv_dC1 = (cellDataJ.dv(wPhaseIdx)
                + cellDataI.dv(wPhaseIdx)) / 2; // dV/dm1= dv/dC^1
    Scalar dv_dC2 = (cellDataJ.dv(nPhaseIdx)
                + cellDataI.dv(nPhaseIdx)) / 2;
 
    Scalar graddv_dC1 = (cellDataJ.dv(wPhaseIdx)
                            - cellDataI.dv(wPhaseIdx)) / dist;
    Scalar graddv_dC2 = (cellDataJ.dv(nPhaseIdx)
                            - cellDataI.dv(nPhaseIdx)) / dist;
 
 
//                    potentialW = problem().variables().potentialWetting(globalIdxI, isIndex);
//                    potentialNW = problem().variables().potentialNonwetting(globalIdxI, isIndex);
//
//                    densityW = (potentialW > 0.) ? densityWI : densityWJ;
//                    densityNW = (potentialNW > 0.) ? densityNWI : densityNWJ;
//
//                    densityW = (potentialW == 0.) ? rhoMeanW : densityW;
//                    densityNW = (potentialNW == 0.) ? rhoMeanNW : densityNW;
    //jochen: central weighting for gravity term
    Scalar densityW = rhoMeanW;
    Scalar densityNW = rhoMeanNW;
 
        // Prepare MPFA
        GlobalPosition globalPos3(0.);
        int globalIdx3=-1;
        TransmissivityMatrix T(0.);
            // prepare second half-edge
            auto additionalIsIt = intersectionIterator;
            TransmissivityMatrix additionalT(0.);
 
        int halfedgesStored = problem().variables().getMpfaData(*intersectionIterator,
                                            additionalIsIt, T, additionalT,
                                            globalPos3, globalIdx3 );
        if (halfedgesStored == 0)
            halfedgesStored = problem().pressureModel().computeTransmissibilities(intersectionIterator,
                                                                    additionalIsIt, T, additionalT,
                                                                    globalPos3, globalIdx3 );
 
        if(!halfedgesStored)
            Dune::dgrave << "something went wrong getting mpfa data on cell " << globalIdxI << std::endl;
 
        // shortcurts mpfa case
        CellData& cellData3 = problem().variables().cellData(globalIdx3);
        Scalar temp1 = globalPos * gravity_;
        Scalar temp2 = globalPosNeighbor * gravity_;
        Scalar temp3 = globalPos3 * gravity_;
 
        potentialW = (cellDataI.pressure(wPhaseIdx)-temp1*densityW) * T[2]
                     + (cellDataJ.pressure(wPhaseIdx)-temp2*densityW) * T[0]
                     + (cellData3.pressure(wPhaseIdx)-temp3*densityW) * T[1];
        potentialNW = (cellDataI.pressure(nPhaseIdx)-temp1*densityNW) * T[2]
                     + (cellDataJ.pressure(nPhaseIdx)-temp2*densityNW) * T[0]
                     + (cellData3.pressure(nPhaseIdx)-temp3*densityNW) * T[1];
        // regard second half edge, if there is one
        if(halfedgesStored == 2)
        {
            int AdditionalIdx = problem().variables().index(additionalIsIt->outside());
            CellData& cellDataAdditional = problem().variables().cellData(AdditionalIdx);
            potentialW += (cellDataI.pressure(wPhaseIdx)-temp1*densityW) * additionalT[2]
                            + (cellDataJ.pressure(wPhaseIdx)-temp2*densityW) * additionalT[0]
                            + (cellDataAdditional.pressure(wPhaseIdx)
                                -(additionalIsIt->outside().geometry().center()*gravity_)
                              *densityW) * additionalT[1];
            potentialNW += (cellDataI.pressure(nPhaseIdx)-temp1*densityNW) * additionalT[2]
                            + (cellDataJ.pressure(nPhaseIdx)-temp2*densityNW) * additionalT[0]
                            + (cellDataAdditional.pressure(nPhaseIdx)
                                -(additionalIsIt->outside().geometry().center()*gravity_)
                              *densityNW) * additionalT[1];
        }
 
 
        // initialize convenience shortcuts
        Scalar lambdaW(0.), lambdaN(0.);
        Scalar dV_w(0.), dV_n(0.);        // dV_a = \sum_k \rho_a * dv/dC^k * X^k_a
        Scalar gV_w(0.), gV_n(0.);        // multipaper eq(3.3) line 3 analogon dV_w
 
 
        //do the upwinding of the mobility depending on the phase potentials
        if (potentialW >= 0.)
        {
            dV_w = (dv_dC1 * cellDataI.massFraction(wPhaseIdx, wCompIdx)
                    + dv_dC2 * cellDataI.massFraction(wPhaseIdx, nCompIdx));
            lambdaW = cellDataI.mobility(wPhaseIdx);
            gV_w = (graddv_dC1 * cellDataI.massFraction(wPhaseIdx, wCompIdx)
                    + graddv_dC2 * cellDataI.massFraction(wPhaseIdx, nCompIdx));
            dV_w *= cellDataI.density(wPhaseIdx);
            gV_w *= cellDataI.density(wPhaseIdx);
        }
        else
        {
            dV_w = (dv_dC1 * cellDataJ.massFraction(wPhaseIdx, wCompIdx)
                    + dv_dC2 * cellDataJ.massFraction(wPhaseIdx, nCompIdx));
            lambdaW = cellDataJ.mobility(wPhaseIdx);
            gV_w = (graddv_dC1 * cellDataJ.massFraction(wPhaseIdx, wCompIdx)
                    + graddv_dC2 * cellDataJ.massFraction(wPhaseIdx, nCompIdx));
            dV_w *= cellDataJ.density(wPhaseIdx);
            gV_w *= cellDataJ.density(wPhaseIdx);
        }
        if (potentialNW >= 0.)
        {
            dV_n = (dv_dC1 * cellDataI.massFraction(nPhaseIdx, wCompIdx)
                    + dv_dC2 * cellDataI.massFraction(nPhaseIdx, nCompIdx));
            lambdaN = cellDataI.mobility(nPhaseIdx);
            gV_n = (graddv_dC1 * cellDataI.massFraction(nPhaseIdx, wCompIdx)
                    + graddv_dC2 * cellDataI.massFraction(nPhaseIdx, nCompIdx));
            dV_n *= cellDataI.density(nPhaseIdx);
            gV_n *= cellDataI.density(nPhaseIdx);
        }
        else
        {
            dV_n = (dv_dC1 * cellDataJ.massFraction(nPhaseIdx, wCompIdx)
                    + dv_dC2 * cellDataJ.massFraction(nPhaseIdx, nCompIdx));
            lambdaN = cellDataJ.mobility(nPhaseIdx);
            gV_n = (graddv_dC1 * cellDataJ.massFraction(nPhaseIdx, wCompIdx)
                    + graddv_dC2 * cellDataJ.massFraction(nPhaseIdx, nCompIdx));
            dV_n *= cellDataJ.density(nPhaseIdx);
            gV_n *= cellDataJ.density(nPhaseIdx);
        }
 
    /* extend T with other matrix entries and assemble to A_    */
    this->A_[globalIdxI][globalIdxJ] += (lambdaW * dV_w + lambdaN * dV_n) * T[0];
    this->A_[globalIdxI][globalIdx3] += (lambdaW * dV_w + lambdaN * dV_n) * T[1];
    this->A_[globalIdxI][globalIdxI] += (lambdaW * dV_w + lambdaN * dV_n) * T[2];
 
    // add gravity to RHS vector
    this->f_[globalIdxI] += (densityW * lambdaW * dV_w + densityNW * lambdaN * dV_n) * temp2 * T[0];
    this->f_[globalIdxI] += (densityW * lambdaW * dV_w + densityNW * lambdaN * dV_n) * temp3 * T[1];
    this->f_[globalIdxI] += (densityW * lambdaW * dV_w + densityNW * lambdaN * dV_n) * temp1 * T[2];
 
    // weithing accounts for the fraction of the subcontrol volume
    Scalar weightingFactor = volume / perimeter;    // transforms flux through area A -> V * A/perimeter
    if(enableVolumeIntegral) // switch off volume integral for mpfa case
    {
        // correct for area integral
        this->A_[globalIdxI][globalIdxJ] -= weightingFactor * (lambdaW * gV_w + lambdaN * gV_n)*T[0];
        this->A_[globalIdxI][globalIdx3] -= weightingFactor * (lambdaW * gV_w + lambdaN * gV_n)*T[1];
        this->A_[globalIdxI][globalIdxI] -= weightingFactor * (lambdaW * gV_w + lambdaN * gV_n)*T[2];
 
        // add gravity to RHS vector
        this->f_[globalIdxI] -= weightingFactor * (densityW * lambdaW * gV_w + densityNW * lambdaN * gV_n) * temp2 * T[0];
        this->f_[globalIdxI] -= weightingFactor * (densityW * lambdaW * gV_w + densityNW * lambdaN * gV_n) * temp3 * T[1];
        this->f_[globalIdxI] -= weightingFactor * (densityW * lambdaW * gV_w + densityNW * lambdaN * gV_n) * temp1 * T[2];
    }
 
    // capillary pressure flux
    Scalar pcGradient = cellDataI.capillaryPressure() * T[2]
                       + cellDataJ.capillaryPressure() * T[0]
                       + cellData3.capillaryPressure() * T[1];
 
    if (this->pressureType == pw)
        pcGradient *= + lambdaN * dV_n - enableVolumeIntegral * weightingFactor * lambdaN * gV_n;
    else if (this->pressureType == pn)
        pcGradient *= - lambdaW * dV_w + enableVolumeIntegral * weightingFactor * lambdaW * gV_w;
 
    this->f_[globalIdxI] += pcGradient;
 
    // include second half-edge
    if(halfedgesStored == 2)
    {
        int AdditionalIdx = problem().variables().index(additionalIsIt->outside());
        CellData& cellDataAdditional = problem().variables().cellData(AdditionalIdx);
 
        /* extend T with other matrix entries and assemble to A_    */
        this->A_[globalIdxI][globalIdxJ] += (lambdaW * dV_w + lambdaN * dV_n) * additionalT[0];
        this->A_[globalIdxI][AdditionalIdx] +=  (lambdaW * dV_w + lambdaN * dV_n) * additionalT[1];
        this->A_[globalIdxI][globalIdxI] +=  (lambdaW * dV_w + lambdaN * dV_n) * additionalT[2];
 
        // add gravity to RHS vector
        this->f_[globalIdxI] += (densityW * lambdaW * dV_w + densityNW * lambdaN * dV_n) * temp2 * additionalT[0];
        this->f_[globalIdxI] += (densityW * lambdaW * dV_w + densityNW * lambdaN * dV_n)
                * (additionalIsIt->outside().geometry().center()*gravity_) * additionalT[1];
        this->f_[globalIdxI] += (densityW * lambdaW * dV_w + densityNW * lambdaN * dV_n) * temp1 * additionalT[2];
 
        if(enableVolumeIntegral) // switch off volume integral for mpfa case
        {
            // correct for area integral
            this->A_[globalIdxI][globalIdxJ] -=  weightingFactor * (lambdaW * gV_w + lambdaN * gV_n)*additionalT[0];
            this->A_[globalIdxI][AdditionalIdx] -= weightingFactor * (lambdaW * gV_w + lambdaN * gV_n)*additionalT[1];
            this->A_[globalIdxI][globalIdxI] -= weightingFactor * (lambdaW * gV_w + lambdaN * gV_n)*additionalT[2];
 
            // add gravity to RHS vector
            this->f_[globalIdxI] -= weightingFactor * (densityW * lambdaW * gV_w + densityNW * lambdaN * gV_n) * temp2 * additionalT[0];
            this->f_[globalIdxI] -= weightingFactor * (densityW * lambdaW * gV_w + densityNW * lambdaN * gV_n)
                    * (additionalIsIt->outside().geometry().center()*gravity_) * additionalT[1];
            this->f_[globalIdxI] -= weightingFactor * (densityW * lambdaW * gV_w + densityNW * lambdaN * gV_n) * temp1 * additionalT[2];
        }
 
        // capillary pressure flux
        pcGradient = cellDataI.capillaryPressure() * additionalT[2]
                           + cellDataJ.capillaryPressure() * additionalT[0]
                           + cellDataAdditional.capillaryPressure() * additionalT[1];
        if (this->pressureType == pw)
            pcGradient *= + lambdaN * dV_n - enableVolumeIntegral * weightingFactor * lambdaN * gV_n;
        else if (this->pressureType == pn)
            pcGradient *= - lambdaW * dV_w + enableVolumeIntegral * weightingFactor * lambdaW * gV_w;
 
        this->f_[globalIdxI] += pcGradient;
    }
}
 
 
template <class TypeTag>
int FV2dPressure2P2CAdaptive<TypeTag>::computeTransmissibilities(const IntersectionIterator& isIt,
        IntersectionIterator& additionalIntersectionIt,
        TransmissivityMatrix& T,
        TransmissivityMatrix& additionalT,
        GlobalPosition& globalPos3,
        int& globalIdx3)
{
    const auto& intersection = *isIt;
 
    // get geometry information of cellI = cell1, cellJ = cell2
    auto element = intersection.inside();
    auto neighbor = intersection.outside();
    GlobalPosition globalPos1 = element.geometry().center();
    GlobalPosition globalPos2 = neighbor.geometry().center();
    DimMatrix K1(problem().spatialParams().intrinsicPermeability(element));
    DimMatrix K2(problem().spatialParams().intrinsicPermeability(neighbor));
 
    // geometry and Data of face IJ in nomenclature of mpfa
    GlobalPosition globalPosFace12 = intersection.geometry().center();
    GlobalPosition integrationOuterNormaln12 = intersection.centerUnitOuterNormal();
    integrationOuterNormaln12 *= intersection.geometry().volume() / 2.0; // TODO: 2.0 only in 2D
 
 
    // nextIs points to next intersection
    auto nextIs = isIt;
    ++nextIs;
    if (nextIs == problem().gridView().iend(element))
        nextIs = problem().gridView().ibegin(element);
 
    // get last intersection : --intersection does not exist
    // paceingIt loops one IS bevore prevIs
    auto prevIs = problem().gridView().ibegin(element);
    auto paceingIt = prevIs;
    for (++paceingIt; paceingIt != problem().gridView().iend(element); ++paceingIt)
    {
        if (!paceingIt->neighbor())  // continue if no neighbor found
            ++prevIs;   // we investigate next paceingIt -> prevIs is also increased
        else if (paceingIt->outside() == intersection.outside())  // we already found prevIs
                break;
        else if (paceingIt == problem().gridView().iend(element))
                prevIs = paceingIt; // this could only happen if isIt is begin, so prevIs has to be last.
        else
            ++prevIs;   // we investigate next paceingIt -> prevIs is also increased
    }
 
    auto face13 = isIt; // as long as face13 == intersection, it is still not found!
    auto face23 = isIt; // as long as face23 == intersection, it is still not found!
 
    // store other intersection for the other interaction region for the other half-edge
    auto isEndIt = problem().gridView().iend(neighbor);
    for (auto isIt23 = problem().gridView().ibegin(neighbor); isIt23 != isEndIt; ++isIt23)
    {
        const auto& intersection23 = *isIt23;
 
        // stop search if found
        if(face13->outside() != intersection.outside())
            break;
 
        if(!intersection23.neighbor())
            continue;
 
        // either prevIs or nextIs is face13, it is that with common interface with cell2
        // investigate if prevIs points to cell 3
        if (prevIs->neighbor())
        {
            if (prevIs->outside() == intersection23.outside())
            {
                face23 = isIt23;
                face13 = prevIs;
                additionalIntersectionIt = nextIs;
            }
        }
        // investigate if nextIs points to cell 3
        if (nextIs->neighbor())
        {
            if (nextIs->outside() == intersection23.outside())
            {
                face23 = isIt23;
                face13 = nextIs;
                additionalIntersectionIt = prevIs;
            }
        }
    }
    if(face13->outside() == intersection.outside()) //means isIt13 not found yet
        Dune::dgrave << "is 13 not found!!!" << std::endl;
 
    // get information of cell3
    globalPos3 = face13->outside().geometry().center();
    globalIdx3 = problem().variables().index(face13->outside());
    // get absolute permeability of neighbor cell 3
    DimMatrix K3(problem().spatialParams().intrinsicPermeability(face13->outside()));
 
 
    // get the intersection node /bar^{x_3} between 'isIt' and 'isIt13', denoted as 'corner123'
    // initialization of corner123
    GlobalPosition corner123(0.);
 
    // get the global coordinate of corner123
    for (int i = 0; i < intersection.geometry().corners(); ++i)
    {
        for (int j = 0; j < face13->geometry().corners(); ++j)
        {
            if (face13->geometry().corner(j) == intersection.geometry().corner(i))
            {
                corner123 = face13->geometry().corner(j);
 
                // stop outer (i) and inner (j) loop
                i = intersection.geometry().corners();
                break;
            }
        }
    }
 
    // center of face in global coordinates, i.e., the midpoint of edge 'isIt24'
    GlobalPosition globalPosFace23 = face23->geometry().center();
 
    // get face volume
    Scalar face23vol = face23->geometry().volume();
 
    // get outer normal vector scaled with half volume of face 'isIt24'
    Dune::FieldVector<Scalar,dimWorld> integrationOuterNormaln23 = face23->centerUnitOuterNormal();
    integrationOuterNormaln23 *= face23vol / 2.0; //TODO: 2.0 only for 2D
 
    // compute normal vectors nu1-nu7 in triangle R for first half edge
    GlobalPosition nu1(0);
    R_.umv(globalPosFace12-globalPos2 ,nu1);    //globalPos2 = globalPosNeighbor
 
    GlobalPosition nu2(0);
    R_.umv(globalPos2-globalPosFace23, nu2);
 
    GlobalPosition nu3(0);
    R_.umv(globalPosFace23-globalPos3, nu3);
 
    GlobalPosition nu4(0);
    R_.umv(globalPos3-corner123, nu4);
 
    GlobalPosition nu5(0);
    R_.umv(corner123-globalPos1, nu5);  //globalPos1 = globalPos
 
    GlobalPosition nu6(0);
    R_.umv(globalPos1-globalPosFace12, nu6);
 
    GlobalPosition nu7(0);
    R_.umv(corner123-globalPos2, nu7);
 
    // compute T, i.e., the area of quadrilateral made by normal vectors 'nu'
    GlobalPosition Rnu2(0);
    R_.umv(nu2, Rnu2);
    Scalar T1 = nu1 * Rnu2;
 
    GlobalPosition Rnu4(0);
    R_.umv(nu4, Rnu4);
    Scalar T2 = nu3 * Rnu4;
 
    GlobalPosition Rnu6(0);
    R_.umv(nu6, Rnu6);
    Scalar T3 = nu5 * Rnu6;
 
    // compute components needed for flux calculation, denoted as 'omega' and 'chi'
    GlobalPosition K2nu1(0);
    K2.umv(nu1, K2nu1); // permeabilityJ = K2 = perm of cell 2 around x_1
    GlobalPosition K2nu2(0);
    K2.umv(nu2, K2nu2);
    GlobalPosition K3nu3(0);
    K3.umv(nu3, K3nu3);
    GlobalPosition K3nu4(0);
    K3.umv(nu4, K3nu4);
    GlobalPosition K1nu5(0);
    K1.umv(nu5, K1nu5); // permeabilityI = K1 = perm of cell 1 around x_3
    GlobalPosition K1nu6(0);
    K1.umv(nu6, K1nu6);
    GlobalPosition Rnu1(0);
    R_.umv(nu1, Rnu1);
 
    double omega111 = /*lambda2 */ (integrationOuterNormaln23 * K2nu1)/T1;
    double omega112 = /*lambda2 */ (integrationOuterNormaln23 * K2nu2)/T1;
    double omega211 = /*lambda2 */ (integrationOuterNormaln12 * K2nu1)/T1;
    double omega212 = /*lambda2 */ (integrationOuterNormaln12 * K2nu2)/T1;
    double omega123 = /*lambda3 */ (integrationOuterNormaln23 * K3nu3)/T2;
    double omega124 = /*lambda3 */ (integrationOuterNormaln23 * K3nu4)/T2;
    double omega235 = /*lambda1 */ (integrationOuterNormaln12 * K1nu5)/T3;
    double omega236 = /*lambda1 */ (integrationOuterNormaln12 * K1nu6)/T3;
    double chi711 = (nu7 * Rnu1)/T1;
    double chi712 = (nu7 * Rnu2)/T1;
 
    // compute transmissibility matrix T = CA^{-1}B+D
    DimMatrix C(0), A(0);
    Dune::FieldMatrix<Scalar,dim,2*dim-dim+1> D(0), B(0);
 
    // evaluate matrix C, D, A, B
    C[0][0] = -omega111;
    C[0][1] = -omega112;
    C[1][0] = -omega211;
    C[1][1] = -omega212;
 
    D[0][0] = omega111 + omega112;
    D[1][0] = omega211 + omega212;
 
    A[0][0] = omega111 - omega124 - omega123*chi711;
    A[0][1] = omega112 - omega123*chi712;
    A[1][0] = omega211 - omega236*chi711;
    A[1][1] = omega212 - omega235 - omega236*chi712;
 
    B[0][0] = omega111 + omega112 + omega123*(1.0 - chi711 - chi712);
    B[0][1] = -omega123 - omega124;
    B[1][0] = omega211 + omega212 + omega236*(1.0 - chi711 - chi712);
    B[1][2] = -omega235 - omega236;
 
    // compute T
    A.invert();
    D += B.leftmultiply(C.rightmultiply(A));
    T = D[1];
    if(!enableSecondHalfEdge )//or abs(intersection.centerUnitOuterNormal()[0])<0.5) // [0]<0.5 => switch off vertical 2hes
    {
        T *= 2;
        // set your map entry
        problem().variables().storeMpfaData(intersection, T, globalPos3, globalIdx3);
        return 1; // indicates that only 1 halfedge was regarded
    }
    else
    {
        // derive additional T for second half edge
 
        // get the intersection node /bar^{x_3} between 'isIt' and 'aditionalIntersection', denoted as 'corner1245'
        // initialization of corner1245
        GlobalPosition corner1245(0.);
 
        // get the global coordinate of corner1245, which is not connected with face13
        auto tempIntersection = face13;
        bool corner1245found = false;
        // ensure iterator increases over local end
        if (tempIntersection == problem().gridView().iend(element))
            tempIntersection = problem().gridView().ibegin(element);
        while (!corner1245found)
        {
            ++tempIntersection;
 
            // ensure iterator increases over local end
            if (tempIntersection == problem().gridView().iend(element))
                tempIntersection = problem().gridView().ibegin(element);
            // enshure we do not arrive at isIt
            if (tempIntersection == isIt)
                continue;
 
            // loop over both corners of is
            for (int i = 0; i < intersection.geometry().corners(); ++i)
            {
                // test if a corner of additionalIntersectionIt also lies on is
                for (int j = 0; j < tempIntersection->geometry().corners(); ++j)
                {
                    if (tempIntersection->geometry().corner(j) == intersection.geometry().corner(i))
                    {
                        corner1245 = tempIntersection->geometry().corner(j);
                        additionalIntersectionIt = tempIntersection;
 
                        // stop outer (i) and inner (j) loop
                        i = intersection.geometry().corners();
                        // stop also Intersection loop
                        corner1245found = true;
                        break;
                    }
                }
            }
        }
        if (!additionalIntersectionIt->neighbor())// or (additionalIntersectionIt->outside().level() == intersection.inside().level()))
        {
            T *= 2;
            // set your map entry
            problem().variables().storeMpfaData(intersection, T, globalPos3, globalIdx3);
            return 1;
        }
 
        // use Markus mpfa-l implementation
        this->transmissibilityAdapter_(isIt, face23, additionalIntersectionIt,
                                        corner1245, additionalT);
 
        // store transmissivity data for second half edge
        problem().variables().storeMpfaData(intersection, additionalIntersectionIt, T,additionalT, globalPos3, globalIdx3);
        // return that information about two interaction volumes have been stored
        return 2;
    }
}
 
 
template<class TypeTag>
int FV2dPressure2P2CAdaptive<TypeTag>::transmissibilityAdapter_(const IntersectionIterator& isIt,
                                const IntersectionIterator& face23_2p2cnaming,
                                IntersectionIterator& additionalIntersectionIt,
                                GlobalPosition& corner1234,
                                TransmissivityMatrix& additionalT)
{
    const auto& intersection = *isIt;
 
    /****** find all 4 faces *********/
    // store additionalIntersection, which is face23 in 2p mpfa-l naming scheme
    auto isIt23 = additionalIntersectionIt;
    auto isIt14 = isIt; //has to be initialized with something
 
    // search for 4th intersection that connects to corner1245, which is needed
    // for markus implementation of the mpfa
 
    // reuse corner1245found bool
    bool face14found = false;
    // repeat search procedure with isIt and face23 (in 2p2c naming)
    auto tempIntersection = face23_2p2cnaming;
 
    while (!face14found)
    {
        ++tempIntersection;
 
        // ensure iterator increases over local end of neighbor J
        if (tempIntersection== problem().gridView().iend(intersection.outside()))
            tempIntersection = problem().gridView().ibegin(intersection.outside());
 
        if(!tempIntersection->neighbor())
            continue;
 
        // enshure we hace not arrived at isIt (but seen from other side)
        if (tempIntersection->outside() == intersection.inside())
            continue; // restart loop to recheck after next increase for local end
 
        // loop over both corners of is
        for (int i = 0; i < intersection.geometry().corners(); ++i)
        {
            // test if a corner of additionalIntersectionIt also lies on is
            for (int j = 0; j < tempIntersection->geometry().corners(); ++j)
            {
                if (tempIntersection->geometry().corner(j) == intersection.geometry().corner(i))
                {
//                        // test if this tempIntersection is better than additionalIntersectionIt
//                        if (tempIntersection->outside().level() > additionalIntersectionIt->outside().level())
//                        {
//                            // select this as element for second half edge
//                            additionalIntersectionIt = tempIntersection;
//                            corner1245 = additionalIntersectionIt->geometry().corner(j);
//                        }
                    isIt14 = tempIntersection;
                    // stop outer (i) and inner (j) loop
                    i = intersection.geometry().corners();
                    // stop also Intersection loop
                    face14found = true;
                    break;
                }
            }
        }
    }
    /**** end find 4 faces **/
 
    // create Interaction Volume object
    FVMPFALInteractionVolume<TypeTag> interactionVolume(problem().gridView().grid());
 
    interactionVolume.setCenterPosition(corner1234);
 
    //***************   store pointer 1
    interactionVolume.setSubVolumeElement(intersection.outside(), 0);
    interactionVolume.setIndexOnElement(intersection.indexInOutside(), 0, 0);
    interactionVolume.setIndexOnElement(isIt14->indexInInside(), 0, 1);
 
    // center of face in global coordinates, i.e., the midpoint of edge 'isIt12'
    const GlobalPosition& globalPosFace12 = intersection.geometry().center();
 
    // get face volume
    Scalar faceVol12 = intersection.geometry().volume() / 2.0;
 
    // get outer normal vector scaled with half volume of face 'isIt12'
    Dune::FieldVector<Scalar, dimWorld> unitOuterNormal12 = intersection.centerUnitOuterNormal();
    unitOuterNormal12 *=-1;
 
    // center of face in global coordinates, i.e., the midpoint of edge 'isIt14'
    const GlobalPosition& globalPosFace41 = isIt14->geometry().center();
 
    // get face volume
    Scalar faceVol41 = isIt14->geometry().volume() / 2.0;
 
    // get outer normal vector scaled with half volume of face 'isIt14': for numbering of n see Aavatsmark, Eigestad
    Dune::FieldVector<Scalar, dimWorld> unitOuterNormal14 = isIt14->centerUnitOuterNormal();
 
    interactionVolume.setNormal(unitOuterNormal12, 0, 0);
    interactionVolume.setNormal(unitOuterNormal14, 0, 1);
    //get the normals of from cell 2 and 4
    unitOuterNormal14 *= -1;
    unitOuterNormal12 *= -1;
    interactionVolume.setFaceArea(faceVol12, 0, 0);
    interactionVolume.setFaceArea(faceVol41, 0, 1);
    interactionVolume.setFacePosition(globalPosFace12, 0, 0);
    interactionVolume.setFacePosition(globalPosFace41, 0, 1);
 
    // access neighbor cell 2 of 'isIt12'
    auto element2 = intersection.inside();
 
    //****************     store pointer 2
    interactionVolume.setSubVolumeElement(element2, 1);
//    interactionVolume.setIndexOnElement(intersection.indexInInside(), 1, 1);
    interactionVolume.setNormal(unitOuterNormal12, 1, 1);
    interactionVolume.setFaceArea(faceVol12, 1, 1);
    interactionVolume.setFacePosition(globalPosFace12, 1, 1);
 
 
    //****************     data for cell 4
    auto element4 = isIt14->outside();
 
    //store pointer 4
    interactionVolume.setSubVolumeElement(element4, 3);
//    interactionVolume.setIndexOnElement(globalIdx4, 3, 0);
 
    interactionVolume.setNormal(unitOuterNormal14, 3, 0);
    interactionVolume.setFaceArea(faceVol41, 3, 0);
    interactionVolume.setFacePosition(globalPosFace41, 3, 0);
 
    //****************     data for cell 3
    const auto& intersection23 = *isIt23;
    auto element3 = intersection23.outside();
    //store pointer 3
    interactionVolume.setSubVolumeElement(element3, 2);
 
    GlobalPosition globalPosFace23 = intersection23.geometry().center();
    Scalar faceVol23 = intersection23.geometry().volume() / 2.0;
    // get outer normal vector scaled with half volume of face : for numbering of n see Aavatsmark, Eigestad
    GlobalPosition unitOuterNormal23 = intersection23.centerUnitOuterNormal();
 
    interactionVolume.setNormal(unitOuterNormal23, 1, 0);
    unitOuterNormal23 *= -1;
    interactionVolume.setNormal(unitOuterNormal23, 2, 1);
    interactionVolume.setFaceArea(faceVol23, 1, 0);
    interactionVolume.setFaceArea(faceVol23, 2, 1);
    Scalar dummy=NAN;
    interactionVolume.setFaceArea(dummy, 2, 0);
    interactionVolume.setFaceArea(dummy, 3, 1);
    interactionVolume.setFacePosition(globalPosFace23, 1, 0);
    interactionVolume.setFacePosition(globalPosFace23, 2, 1);
 
    Dune::FieldVector<Scalar, dim> unity(1.);
    std::vector<Dune::FieldVector<Scalar, dim> > lambda(4, unity);
 
    Dune::FieldMatrix<Scalar,dim,2*dim-dim+1> T;
    int triangleType = transmissibilityCalculator_.calculateTransmissibility(
            T, interactionVolume, lambda,
            0, 1, 2, 3);
 
    // 3.decide which triangle (which transmissibility coefficients) to use
    if (triangleType == TransmissibilityCalculator::rightTriangle)
    {
        additionalIntersectionIt = isIt23;
        // Translate flux from 2p mpfa-l local indexing to
        // 2p2c naming with i and j (reverse direction)
        // and adjust for the fact that it is right Triangle
        additionalT[0] = -T[1][2];
        additionalT[1] = -T[1][1];
        additionalT[2] = -T[1][0];
    }
    else if (triangleType == TransmissibilityCalculator::leftTriangle)
    {
        additionalIntersectionIt = isIt14;
        // Translate flux from 2p mpfa-l local indexing to
        // 2p2c naming with i and j (reverse direction)
        // and adjust for the fact that it is left Triangle
        additionalT[0] = -T[1][0];
        additionalT[1] = -T[1][1];
        additionalT[2] = -T[1][2];
 
    }
    else
        DUNE_THROW(Dune::MathError, "No transmissivity for second half edge found!");
 
    return triangleType;
}
 
 
}//end namespace Dumux
#endif